PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011324
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 153aa    MW: 17101 Da    PI: 4.8413
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45837365PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB39.11.8e-127100694
      NF-YB   6 rflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 +lP + v r++k  l    +++   +skd      e    fi ++++ a+d c++ kr+ +n++d++ al +  f +++ plk+ l+++r+ +
  Vun011324   7 DELPRSIVRRVVKDKLSrcsEEGEisVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFRKKN 100
                5688888999999888622234541156788888899999***************************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.8E-307137IPR009072Histone-fold
PfamPF008081.6E-7877IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.55E-229125IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
NRMAEADELP RSIVRRVVKD KLSRCSEEGE ISVSKDGLLA FSESGRIFIH YLSATANDIC  60
KESKRQIVNA EDVFKALEET EFSEFIRPLK ASLEEFRKKN VGKKAAVGKG KEEEQRKKRK  120
LEAESSDKGE ASINDESSDK AEGSDKGEGE DDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196118RKKNVGKKAAVGKGKEEEQRKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132441.18e-94hypothetical protein PHAVU_011G094600g
TrEMBLA0A0L9V6J82e-95A0A0L9V6J8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SCC42e-95A0A0S3SCC4_PHAAN; Uncharacterized protein
STRINGGLYMA11G18960.13e-80(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-40nuclear factor Y, subunit B11